An Intelligent Technique for Predicting Adverse Drug Reactions (ADRs) Using Modified Shrinkage Function Based Extreme Gradient Boost (MSXGB) Classifier
DOI:
https://doi.org/10.61841/c6nep017Keywords:
Drug Side Effect, Predictive Modeling,, Machine Learning, , , Feature Selection,, Modified Orthogonal Opposition Learning based Cuckoo Search Algorithm (MOOLCSA),, Modified Shrinkage Function based Extreme Gradient Boost (MSXGB) Classifier Model.Abstract
It has turned out to be highly significant for the prediction of Adverse Drug Reactions (ADRs) in consequence of the massive universal health troubles and malfunction of drugs. This signifies the necessity for earlier prediction of possible ADRs in preclinical phases that could recover failures of drug and decrease the duration and expense of progress and therefore offering effective and harmless therapeutic decisions for patients. Despite the fact that different techniques have been proposed for prediction of ADR, still there exists need to enhance the classification and precision in predicting adverse drug reactions. This research work presents a framework for discovering the side effects using the best feature selection and classification methods. The proposed research work presents a new approach to measure the features (attributes) in drug prediction dataset using the Modified Orthogonal Opposition Learning based Cuckoo Search Algorithm (MOOLCSA). Finally in this work, Modified Extreme Gradient Boost (MXGB)is used as a classifier that acts as a supervised machine learning approach and could predict Adverse Drug Reactions. This proposed approach holds the benefits of better predictability, interpretability and is an intelligent technique that is beneficial for both patients and also the medical researchers. The simulation result shows that the proposed Modified Shrinkage function based Extreme Gradient Boost (MSXGB) classifier model provides best side effect prediction compared to the other prediction techniques.
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[1] Liu, M., Wu, Y., Chen, Y., Sun, J., Zhao, Z., Chen, X. W., ...&Xu, H. (2012). Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs. Journal of the American Medical Informatics Association, 19(e1), e28-e35.
[2] Bresso, E., Grisoni, R., Marchetti, G., Karaboga, A. S., Souchet, M., Devignes, M. D., &Smaïl-Tabbone, M. (2013). Integrative relational machine-learning for understanding drug side-effect profiles. BMC bioinformatics, 14(1), 207.
[3] Zhang, W., Liu, F., Luo, L., & Zhang, J. (2015). Predicting drug side effects by multi-label learning and ensemble learning. BMC bioinformatics, 16(1), 365.
[4] Cheng, F., Liu, C., Jiang, J., Lu, W., Li, W., Liu, G., ...& Tang, Y. (2012). Prediction of drug-target interactions and drug repositioning via network-based inference. PLoS computational biology, 8(5), e1002503.
[5] Wang, K., Sun, J., Zhou, S., Wan, C., Qin, S., Li, C., ...& Yang, L. (2013). Prediction of drug-target interactions for drug repositioning only based on genomic expression similarity. PLoS computational biology, 9(11), e1003315.
[6] Montanari, F., &Ecker, G. F. (2015). Prediction of drug–ABC-transporter interaction—Recent advances and future challenges. Advanced drug delivery reviews, 86, 17-26.
[7] Tatonetti, N. P., Liu, T., & Altman, R. B. (2009). Predicting drug side-effects by chemical systems biology. Genome biology, 10(9), 238.
[8] Shaked, Itay, Matthew A. Oberhardt, NirAtias, RodedSharan, and EytanRuppin. "Metabolic network prediction of drug side effects." Cell systems 2, no. 3 (2016): 209-213.
[9] Cheng, T., Hao, M., Takeda, T., Bryant, S. H., & Wang, Y. (2017). Large-scale prediction of drug-target interaction: a data-centric review. The AAPS journal, 19(5), 1264-1275.
[10] Bugrim, A., Nikolskaya, T., &Nikolsky, Y. (2004). Early prediction of drug metabolism and toxicity: systems biology approach and modeling. Drug discovery today, 9(3), 127-135.
[11] Kuhn, M., Campillos, M., González, P., Jensen, L. J., & Bork, P. (2008). Large‐scale prediction of drug–target relationships. FEBS letters, 582(8), 1283-1290.
[12] Tatonetti, N. P., Patrick, P. Y., Daneshjou, R., & Altman, R. B. (2012). Data-driven prediction of drug effects and interactions. Science translational medicine, 4(125), 125ra31-125ra31.
[13] Yamanishi, Y., Pauwels, E., &Kotera, M. (2012). Drug side-effect prediction based on the integration of chemical and biological spaces. Journal of chemical information and modeling, 52(12), 3284-3292.
[14] Zhang, P., Wang, F., Hu, J., &Sorrentino, R. (2015). Label propagation prediction of drug-drug interactions based on clinical side effects. Scientific reports, 5, 12339.
[15] Gottlieb, A., Stein, G. Y., Ruppin, E., &Sharan, R. (2011). PREDICT: a method for inferring novel drug indications with application to personalized medicine. Molecular systems biology, 7(1).
[16] Cheng, F., Li, W., Wu, Z., Wang, X., Zhang, C., Li, J., ...& Tang, Y. (2013). Prediction of polypharmacological profiles of drugs by the integration of chemical, side effect, and therapeutic space. Journal of chemical information and modeling, 53(4), 753-762.
[17] Zhao, X. M., Iskar, M., Zeller, G., Kuhn, M., Van Noort, V., & Bork, P. (2011). Prediction of drug combinations by integrating molecular and pharmacological data. PLoS computational biology, 7(12), e1002323.
[18] Shaked, I., Oberhardt, M. A., Atias, N., Sharan, R., &Ruppin, E. (2016). Metabolic network prediction of drug side effects. Cell systems, 2(3), 209-213.
[19] Pauwels, E., Stoven, V., &Yamanishi, Y. (2011). Predicting drug side-effect profiles: a chemical fragment- based approach. BMC bioinformatics, 12(1), 169.
[20] Mizutani, S., Pauwels, E., Stoven, V., Goto, S., &Yamanishi, Y. (2012). Relating drug–protein interaction network with drug side effects. Bioinformatics, 28(18), i522-i528.
[21] Huang, L. C., Wu, X., & Chen, J. Y. (2013). Predicting adverse drug reaction profiles by integrating protein interaction networks with drug structures. Proteomics, 13(2), 313-324.
[22] Takarabe, M., Kotera, M., Nishimura, Y., Goto, S., &Yamanishi, Y. (2012). Drug target prediction using adverse event report systems: a pharmacogenomic approach. Bioinformatics, 28(18), i611-i618.
[23] Atias, N., &Sharan, R. (2011). An algorithmic framework for predicting side effects of drugs. Journal of Computational Biology, 18(3), 207-218.
[24] Lee, W. P., Huang, J. Y., Chang, H. H., Lee, K. T., & Lai, C. T. (2017). Predicting drug side effects using data analytics and the integration of multiple data sources. IEEE Access, 5, 20449-20462.
[25] Yang, X. S., & Deb, S. (2009, December). Cuckoo search via Lévy flights. In 2009 World Congress on Nature & Biologically Inspired Computing (NaBIC) (pp. 210-214). IEEE.
[26] Yang, X. S., & Deb, S. (2013). Multiobjective cuckoo search for design optimization. Computers & Operations Research, 40(6), 1616-1624.
[27] Bansal, A., &Kaur, S. (2018, April). Extreme Gradient Boosting Based Tuning for Classification in Intrusion Detection Systems. In International Conference on Advances in Computing and Data Sciences (pp. 372-380). Springer, Singapore.
[28] Shi, H., Wang, H., Huang, Y., Zhao, L., Qin, C., & Liu, C. (2019). A hierarchical method based on weighted extreme gradient boosting in ECG heartbeat classification. Computer methods and programs in biomedicine, 171, 1-10.
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